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  Alignment Analysis
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 Tools    >> Computational Immunology
  Antigenic Peptide Prediction
An antigen prediction tool that follows the Kolaskar and Tongaonkar (1990) method is available from our antigenic site.
A tool designed to aid in the development of multi-epitope vaccines against pathogenic organisms based on genome-wide predictions of promiscous MHCI-restricted epitopes [Restricted Access].
A server which calculates the variability from multiple sequence alignment using the Shannon entropy (H) function, the Simpson entropy function and the Wu-Kabat entropy function.
Predicts MHC binding peptides from an input protein based on their similarity to a set of peptides known to bind to a given MHC molecule. Similarity is scored using Position Specific Scoring Matrixes (PSSM) derived from the aligned peptides known to bind to that MHC molecule.
This server computes binding affinity of peptides to TAP (Transporter Associated with Antigen Processing) using a Support Vector Machine model.
EPIMHC: A database of MHC-restricted peptide ligands for tailored computational vaccinology.
  PCPS: Protesomal cleavage prediction server
A tool cleavage by the proteasome and the immunoproteasome
  HLAV3D: HLA Squence Variability in 3D
A tool that creates a three dimensional representation of variability in HLA molecules
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